2023
Ba, X., Raisen, CL., Restif, O., Cavaco, LM., Vingsbo Lundberg, C., Lee, JYH., Howden, BP., Bartels, MD., Strommenger, B., Harrison, EM., Larsen, AR., Holmes, MA. and Larsen, J., 2023. Cryptic susceptibility to penicillin/β-lactamase inhibitor combinations in emerging multidrug-resistant, hospital-adapted Staphylococcus epidermidis lineages. Nat Commun, v. 14
Doi: http://doi.org/10.1038/s41467-023-42245-y
2022
Ruiz-Aravena, M., McKee, C., Gamble, A., Lunn, T., Morris, A., Snedden, CE., Yinda, CK., Port, JR., Buchholz, DW., Yeo, YY., Faust, C., Jax, E., Dee, L., Jones, DN., Kessler, MK., Falvo, C., Crowley, D., Bharti, N., Brook, CE., Aguilar, HC., Peel, AJ., Restif, O., Schountz, T., Parrish, CR., Gurley, ES., Lloyd-Smith, JO., Hudson, PJ., Munster, VJ. and Plowright, RK., 2022. Author Correction: Ecology, evolution and spillover of coronaviruses from bats. Nat Rev Microbiol, v. 20
Doi: http://doi.org/10.1038/s41579-022-00691-3
Kalmar, L., Gupta, S., Kean, IRL., Ba, X., Hadjirin, N., Lay, EM., de Vries, SPW., Bateman, M., Bartlet, H., Hernandez-Garcia, J., Tucker, AW., Restif, O., Stevens, MP., Wood, JLN., Maskell, DJ., Grant, AJ. and Holmes, MA., 2022. HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities. PLoS Genet, v. 18
Doi: http://doi.org/10.1371/journal.pgen.1009776
Ruiz-Aravena, M., McKee, C., Gamble, A., Lunn, T., Morris, A., Snedden, CE., Yinda, CK., Port, JR., Buchholz, DW., Yeo, YY., Faust, C., Jax, E., Dee, L., Jones, DN., Kessler, MK., Falvo, C., Crowley, D., Bharti, N., Brook, CE., Aguilar, HC., Peel, AJ., Restif, O., Schountz, T., Parrish, CR., Gurley, ES., Lloyd-Smith, JO., Hudson, PJ., Munster, VJ. and Plowright, RK., 2022. Ecology, evolution and spillover of coronaviruses from bats. Nat Rev Microbiol, v. 20
Doi: http://doi.org/10.1038/s41579-021-00652-2
2021 (Accepted for publication)
Giles, JR., Peel, AJ., Wells, K., Plowright, RK., McCallum, H. and Restif, O., 2021 (Accepted for publication). Optimizing non-invasive sampling of an infectious bat virus Ecology and Evolution,
Doi: http://doi.org/10.1002/ece3.7830
Gibson, L., Ribas, MP., Kemp, J., Restif, O., Suu-Ire, RD., Wood, JLN. and Cunningham, AA., 2021 (Accepted for publication). Persistence of Multiple Paramyxoviruses in a Closed Captive Colony of Fruit Bats (Eidolon helvum). Viruses, v. 13
Doi: http://doi.org/10.3390/v13081659
Hughes, K., Bochyńska, D., Lloyd, S. and Restif, O., 2021 (Accepted for publication). Eimeria stiedae causes most of the white-spotted liver lesions in wild European rabbits in Cambridgeshire, United Kingdom Journal of Veterinary Diagnostic Investigation,
2021
Peacock, S., Ludden, C., Gouliouris, T., Coll, F., Parkhill, J. and Blane, E., 2021. Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study The Lancet Microbe, v. 2
Doi: http://doi.org/10.1016/S2666-5247(21)00117-8
Lunn, TJ., Peel, AJ., McCallum, H., Eby, P., Kessler, MK., Plowright, RK. and Restif, O., 2021. Spatial dynamics of pathogen transmission in communally roosting species: Impacts of changing habitats on bat-virus dynamics. J Anim Ecol, v. 90
Doi: http://doi.org/10.1111/1365-2656.13566
Jolma, ER., Gibson, L., Suu-Ire, RD., Fleischer, G., Asumah, S., Languon, S., Restif, O., Wood, JLN. and Cunningham, AA., 2021. Longitudinal Secretion of Paramyxovirus RNA in the Urine of Straw-Coloured Fruit Bats (Eidolon helvum). Viruses, v. 13
Doi: http://doi.org/10.3390/v13081654
Roberts, M., Dobson, A., Restif, O. and Wells, K., 2021. Challenges in modelling the dynamics of infectious diseases at the wildlife-human interface. Epidemics, v. 37
Doi: http://doi.org/10.1016/j.epidem.2021.100523
2020 (Accepted for publication)
Holmes, M., Ba, X., Parkhill, J., Raisen, C., Hadjirin, N., Lay, E. and Restif, O., 2020 (Accepted for publication). Mechanisms of Beta-lactam resistance of Streptococcus uberis isolated from bovine mastitis cases Veterinary Microbiology,
Vlazaki, M., Rossi, O., Price, DJ., McLean, C., Grant, AJ., Mastroeni, P. and Restif, O., 2020 (Accepted for publication). A data-based mathematical modelling study to quantify the effects of ciprofloxacin and ampicillin on the within-host dynamics of Salmonella enterica during treatment and relapse Journal of the Royal Society Interface,
Mastroeni, P., Grant, A., Kanvatirth, P. and Blacklaws, B., 2020 (Accepted for publication). The dual role of splenic mononuclear and polymorphonuclear cells in the outcome of ciprofloxacin treatment of Salmonella enterica infections Journal of Antimicrobial Chemotherapy,
Mastroeni, P. and Rossi, O., 2020 (Accepted for publication). Within-host spatiotemporal dynamic of systemic salmonellosis: ways to track infection, reaction to vaccination and antimicrobial treatment Journal of Microbiological Methods,
Thompson, RN., Hollingsworth, TD., Isham, V., Arribas-Bel, D., Ashby, B., Britton, T., Challoner, P., Chappell, LHK., Clapham, H., Cunniffe, NJ., Dawid, AP., Donnelly, CA., Eggo, R., Funk, S., Gilbert, N., Gog, JR., Glendinning, P., Hart, WS., Heesterbeek, H., House, T., Keeling, M., Kiss, IZ., Kretzschmar, M., Lloyd, AL., McBryde, ES., McCaw, JM., Miller, JC., McKinley, TJ., Morris, M., ONeill, PD., Pearson, CAB., Parag, KV., Pellis, L., Pulliam, JRC., Ross, JV., Tildesley, MJ., Tomba, GS., Silverman, BW., Struchiner, CJ., Trapman, P., Webb, CR., Mollison, D. and Restif, O., 2020 (Accepted for publication). Key Questions for Modelling COVID-19 Exit Strategies Proceedings of the Royal Society B: Biological Sciences,
Doi: http://doi.org/10.1098/rspb.2020.1405
Hughes, K., Restif, O. and Dobson, J., 2020 (Accepted for publication). Expression of Phosphorylated Signal Transducer and Activator of Transcription 3 (pSTAT3) 3 and its Prognostic Significance in Canine Anal Sac Adenocarcinoma Journal of Comparative Pathology,
Vlazaki, M., Huber, J. and Restif, O., 2020 (Accepted for publication). Integrating Mathematical Models with Experimental Data to Investigate the Within-Host Dynamics of Bacterial Infections Pathogens and Disease,
2020
Glennon, E., Jephcott, F., Oti, A., Carlson, C., Bustos Carillo, F., Hranac, R., Parker, E., Wood, J. and Restif, O., 2020. Syndromic detectability of haemorrhagic fever outbreaks
Doi: 10.1101/2020.03.28.20019463
Vlazaki, M., Price, DJ. and Restif, O., 2020. An experimental design tool to optimize inference precision in data-driven mathematical models of bacterial infections in vivo. J R Soc Interface, v. 17
Doi: http://doi.org/10.1098/rsif.2020.0717
2019 (Accepted for publication)
Sanchini, L., Hare, C., Restif, O. and Williams, TL., 2019 (Accepted for publication). Preliminary evaluation of a salivary urea test strip method for use in dogs Veterinary Clinical Pathology,
Peacock, S., Harrison, E., Coll, F., Blane, E., Bellis, K., Holmes, M., Parkhill, J. and Ba, X., 2019 (Accepted for publication). Genomic identification of cryptic susceptibility to penicillins and β-lactamase
inhibitors in methicillin-resistant Staphylococcus aureus Nature Microbiology,
Lunn, T., Restif, O., Peel, AJ., Munster, VJ., de Wit, E., Sokolow, S., van Doremalen, N., Hudson, P. and McCallum, H., 2019 (Accepted for publication). Dose-response and transmission: the nexus between reservoir hosts, environment, and recipient hosts Philosophical Transactions of the Royal Society B: Biological Sciences,
Doi: http://doi.org/10.1098/rstb.2019.0016
Glennon, E., Becker, DJ., Peel, AJ., Garnier, R., Suu Ire, RD., Gibson, L., Hayman, DTS., Wood, JLN., Cunningham, AA., Plowright, RK. and Restif, O., 2019 (Accepted for publication). What's stirring in the reservoir? Modelling mechanisms of henipavirus circulation in fruit bat hosts. Philosophical Transactions of the Royal Society B: Biological Sciences,
Doi: http://doi.org/10.1098/rstb.2019.0021
Glennon, EE., Jephcott, FL., Restif, O. and Wood, JLN., 2019 (Accepted for publication). Estimating undetected Ebola spillovers. PLoS Neglected Tropical Diseases, v. 13
Doi: http://doi.org/10.1371/journal.pntd.0007428
2019
Hare, C., Sanchini, L., Worrall, C., Van Poucke, S., Alves, L., Restif, O. and Freeman, P., 2019. Rapid in-house method of CSF analysis utilising sedimentation direct from the spinal needle. J Small Anim Pract,
Doi: http://doi.org/10.1111/jsap.13010
2018 (Accepted for publication)
Peel, AP., Baker, K., Broder, C., Cunningham, A., Fooks, AR., Garnier, R., Wood, JLN. and Restif, OLJ., 2018 (Accepted for publication). Support for viral persistence in bats from age-specific serology and models of maternal immunity. Scientific Reports,
Doi: http://doi.org/10.1038/s41598-018-22236-6
Hayman, DTS., Luis, A., Restif, OLJ., Baker, K., Fooks, A., Leach, C., Horton, D., Suu-Ire, R., Cunningham, AA., Wood, J. and Webb, C., 2018 (Accepted for publication). Maternal antibody and the maintenance of a lyssavirus in populations of seasonally breeding African bats PLoS ONE,
2018
Paez, DJ., Restif, OLJ., Eby, P. and Plowright, RK., 2018. Optimal foraging in seasonal environments: implications for residency of Australian flying foxes in food-subsidized urban landscapes Philosophical Transactions of the Royal Society B: Biological Sciences, v. 373
Doi: http://doi.org/10.1098/rstb.2017.0097
2017 (Accepted for publication)
Price, DJ., Breuzé, A., Dybowski, R., Mastroeni, P. and Restif, OLJ., 2017 (Accepted for publication). An Efficient Moments-Based Inference Method for Within-Host Bacterial Infection Dynamics PLoS Computational Biology,
Glennon, EE., Restif, O., Sbarbaro, SR., Garnier, R., Suu-Ire, RD., Osei-Amponsah, R., Cunningham, AA., Wood, JLN. and Peel, AJ., 2017 (Accepted for publication). Domesticated animals as hosts of henipaviruses and filoviruses: A systematic review The Veterinary Journal, v. 233
Doi: http://doi.org/10.1016/j.tvjl.2017.12.024
2017
Hernandez, J., Wang, J., Restif, O., Mather, A., Holmes, M., Weinert, L., Wileman, Y., Maskell, D. and Tucker, A., 2017. Patterns of antimicrobial resistance in Streptococcus suis isolates from pigs with or without streptococcal disease in England between 2009 and 2014 Veterinary Microbiology, v. 207
Doi: http://doi.org/10.1016/j.vetmic.2017.06.002
Rossi, O., Dybowski, R., Maskell, DJ., Grant, AJ., Restif, O. and Mastroeni, P., 2017. Within-host spatiotemporal dynamics of systemic Salmonella infection during and after antimicrobial treatment Journal of Antimicrobial Chemotherapy,
Doi: http://doi.org/10.1093/jac/dkx294
2016
Plowright, RK., Peel, AJ., Streicker, DG., Gilbert, AT., McCallum, H., Wood, J., Baker, ML. and Restif, O., 2016. Transmission or Within-Host Dynamics Driving Pulses of Zoonotic Viruses in Reservoir-Host Populations. PLoS Negl Trop Dis, v. 10
Doi: http://doi.org/10.1371/journal.pntd.0004796
Mannerings, AO., Osikowicz, LM., Restif, O., Nyarko, E., Suu-Ire, R., Cunningham, AA., Wood, JLN. and Kosoy, MY., 2016. Exposure to Bat-Associated Bartonella spp. among Humans and Other Animals, Ghana. Emerg Infect Dis, v. 22
Doi: http://doi.org/10.3201/eid2205.151908
Peel, AJ., Field, HE., Reid, PA., Plowright, RK., Broder, CC., Skerratt, LF., Hayman, DTS., Restif, O., Taylor, M., Martin, G., Crameri, G., Smith, I., Baker, M., Marsh, GA., Barr, J., Breed, AC., Wood, JLN., Dhand, N., Toribio, J-A., Cunningham, AA., Fulton, I., Bryden, WL., Secombe, C. and Wang, L-F., 2016. The equine Hendra virus vaccine remains a highly effective preventative measure against infection in horses and humans: 'The imperative to develop a human vaccine for the Hendra virus in Australia'. Infect Ecol Epidemiol, v. 6
Doi: http://doi.org/10.3402/iee.v6.31658
2015
Escobar, LE., Restif, O., Yung, V., Favi, M., Pons, DJ. and Medina-Vogel, G., 2015. Spatial and temporal trends of bat-borne rabies in Chile. Epidemiol Infect, v. 143
Doi: http://doi.org/10.1017/S095026881400226X
Kamins, AO., Rowcliffe, JM., Ntiamoa-Baidu, Y., Cunningham, AA., Wood, JLN. and Restif, O., 2015. Characteristics and Risk Perceptions of Ghanaians Potentially Exposed to Bat-Borne Zoonoses through Bushmeat. Ecohealth, v. 12
Doi: http://doi.org/10.1007/s10393-014-0977-0
Diaz, SA., Mooring, EQ., Rens, EG. and Restif, O., 2015. Association with pathogenic bacteria affects life-history traits and population growth in Caenorhabditis elegans. Ecol Evol, v. 5
Doi: http://doi.org/10.1002/ece3.1461
Restif, O. and Graham, AL., 2015. Within-host dynamics of infection: from ecological insights to evolutionary predictions. Philos Trans R Soc Lond B Biol Sci, v. 370
Doi: http://doi.org/10.1098/rstb.2014.0304
Escobar, LE., Peterson, AT., Papeş, M., Favi, M., Yung, V., Restif, O., Qiao, H. and Medina-Vogel, G., 2015. Ecological approaches in veterinary epidemiology: mapping the risk of bat-borne rabies using vegetation indices and night-time light satellite imagery. Vet Res, v. 46
Doi: http://doi.org/10.1186/s13567-015-0235-7
Dybowski, R., Restif, O., Goupy, A., Maskell, DJ., Mastroeni, P. and Grant, AJ., 2015. Single passage in mouse organs enhances the survival and spread of Salmonella enterica. J R Soc Interface, v. 12
Doi: http://doi.org/10.1098/rsif.2015.0702
2014
Peel, AJ., Pulliam, JRC., Luis, AD., Plowright, RK., O'Shea, TJ., Hayman, DTS., Wood, JLN., Webb, CT. and Restif, O., 2014. The effect of seasonal birth pulses on pathogen persistence in wild mammal populations. Proc Biol Sci, v. 281
Doi: http://doi.org/10.1098/rspb.2013.2962
Diaz, SA. and Restif, O., 2014. Spread and transmission of bacterial pathogens in experimental populations of the nematode Caenorhabditis elegans. Appl Environ Microbiol, v. 80
Doi: http://doi.org/10.1128/AEM.01037-14
Morters, MK., McKinley, TJ., Restif, O., Conlan, AJK., Cleaveland, S., Hampson, K., Whay, HR., Damriyasa, IM. and Wood, JLN., 2014. The demography of free-roaming dog populations and applications to disease and population control. J Appl Ecol, v. 51
Doi: http://doi.org/10.1111/1365-2664.12279
Coward, C., Restif, O., Dybowski, R., Grant, AJ., Maskell, DJ. and Mastroeni, P., 2014. The effects of vaccination and immunity on bacterial infection dynamics in vivo. PLoS Pathog, v. 10
Doi: http://doi.org/10.1371/journal.ppat.1004359
Morters, MK., McKinley, TJ., Horton, DL., Cleaveland, S., Schoeman, JP., Restif, O., Whay, HR., Goddard, A., Fooks, AR., Damriyasa, IM. and Wood, JLN., 2014. Achieving population-level immunity to rabies in free-roaming dogs in Africa and Asia. PLoS Negl Trop Dis, v. 8
Doi: http://doi.org/10.1371/journal.pntd.0003160
2013
Lunn, D., Goudie, RJB., Wei, C., Kaltz, O. and Restif, O., 2013. Modelling the dynamics of an experimental host-pathogen microcosm within a hierarchical Bayesian framework. PLoS One, v. in press
Restif, O., 2013. An offer you cannot refuse: down-regulation of immunity in response to a pathogen's retaliation threat. J Evol Biol, v. 26
Doi: http://doi.org/10.1111/jeb.12209
Dybowski, R., McKinley, TJ., Mastroeni, P. and Restif, O., 2013. Nested sampling for Bayesian model comparison in the context of Salmonella disease dynamics. PLoS One, v. 8
Doi: http://doi.org/10.1371/journal.pone.0082317
Morters, MK., Restif, O., Hampson, K., Cleaveland, S., Wood, JLN. and Conlan, AJK., 2013. Evidence-based control of canine rabies: a critical review of population density reduction. J Anim Ecol, v. 82
Doi: http://doi.org/10.1111/j.1365-2656.2012.02033.x
Restif, O., Goh, YS., Palayret, M., Grant, AJ., McKinley, TJ., Clark, MR. and Mastroeni, P., 2013. Quantification of the effects of antibodies on the extra- and intracellular dynamics of Salmonella enterica. J R Soc Interface, v. 10
Doi: http://doi.org/10.1098/rsif.2012.0866
Mideo, N., Acosta-Serrano, A., Aebischer, T., Brown, MJF., Fenton, A., Friman, VP., Restif, O., Reece, SE., Webster, JP. and Brown, SP., 2013. Life in cells, hosts, and vectors: Parasite evolution across scales Infection, Genetics and Evolution, v. 13
Doi: http://doi.org/10.1016/j.meegid.2012.03.016
2012
Hayman, DTS., Fooks, AR., Rowcliffe, JM., McCrea, R., Restif, O., Baker, KS., Horton, DL., Suu-Ire, R., Cunningham, AA. and Wood, JLN., 2012. Endemic Lagos bat virus infection in Eidolon helvum. Epidemiol Infect, v. 140
Doi: http://doi.org/10.1017/S0950268812000167
Gog, JR., Murcia, A., Osterman, N., Restif, O., McKinley, TJ., Sheppard, M., Achouri, S., Wei, B., Mastroeni, P., Wood, JLN., Maskell, DJ., Cicuta, P. and Bryant, CE., 2012. Dynamics of Salmonella infection of macrophages at the single cell level. J R Soc Interface, v. 9
Doi: http://doi.org/10.1098/rsif.2012.0163
Restif, O., Hayman, DTS., Pulliam, JRC., Plowright, RK., George, DB., Luis, AD., Cunningham, AA., Bowen, RA., Fooks, AR., O'Shea, TJ., Wood, JLN. and Webb, CT., 2012. Model-guided fieldwork: practical guidelines for multidisciplinary research on wildlife ecological and epidemiological dynamics. Ecol Lett, v. 15
Doi: http://doi.org/10.1111/j.1461-0248.2012.01836.x
Wood, JLN., Leach, M., Waldman, L., Macgregor, H., Fooks, AR., Jones, KE., Restif, O., Dechmann, D., Hayman, DTS., Baker, KS., Peel, AJ., Kamins, AO., Fahr, J., Ntiamoa-Baidu, Y., Suu-Ire, R., Breiman, RF., Epstein, JH., Field, HE. and Cunningham, AA., 2012. A framework for the study of zoonotic disease emergence and its drivers: spillover of bat pathogens as a case study. Philos Trans R Soc Lond B Biol Sci, v. 367
Doi: http://doi.org/10.1098/rstb.2012.0228
Hayman, DTS., McCrea, R., Restif, O., Suu-Ire, R., Fooks, AR., Wood, JLN., Cunningham, AA. and Rowcliffe, JM., 2012. Demography of straw-colored fruit bats in Ghana Journal of Mammalogy, v. 93
Doi: http://doi.org/10.1644/11-MAMM-A-270.1
2011
Goh, YS., Grant, AJ., Restif, O., McKinley, TJ., Armour, KL., Clark, MR. and Mastroeni, P., 2011. Human IgG isotypes and activating Fcγ receptors in the interaction of Salmonella enterica serovar Typhimurium with phagocytic cells. Immunology, v. 133
Doi: http://doi.org/10.1111/j.1365-2567.2011.03411.x
Kamins, AO., Restif, O., Ntiamoa-Baidu, Y., Suu-Ire, R., Hayman, DTS., Cunningham, AA., Wood, JLN. and Rowcliffe, JM., 2011. Uncovering the fruit bat bushmeat commodity chain and the true extent of fruit bat hunting in Ghana, West Africa Biological Conservation,
2010
2009
Mastroeni, P., Grant, A., Restif, O. and Maskell, D., 2009. A dynamic view of the spread and intracellular distribution of Salmonella enterica. Nat Rev Microbiol, v. 7
Doi: http://doi.org/10.1038/nrmicro2034
2008
Restif, O., Wolfe, DN., Goebel, EM., Bjornstad, ON. and Harvill, ET., 2008. Of mice and men: asymmetric interactions between Bordetella pathogen species. Parasitology, v. 135
Doi: http://doi.org/10.1017/S0031182008000279
Grant, AJ., Restif, O., McKinley, TJ., Sheppard, M., Maskell, DJ. and Mastroeni, P., 2008. Modelling within-host spatiotemporal dynamics of invasive bacterial disease PLoS Biology, v. 6
Doi: 10.1371/journal.pbio.0060074
2007
Wolfe, DN., Goebel, EM., Bjornstad, ON., Restif, O. and Harvill, ET., 2007. The O antigen enables Bordetella parapertussis to avoid Bordetella pertussis-induced immunity. Infect Immun, v. 75
Doi: http://doi.org/10.1128/IAI.00763-07
2006
Restif, O. and Kaltz, O., 2006. Condition-dependent virulence in a horizontally and vertically transmitted bacterial parasite OIKOS, v. 114
Restif, O. and Grenfell, BT., 2006. Integrating life history and cross-immunity into the evolutionary dynamics of pathogens. Proc Biol Sci, v. 273
Doi: http://doi.org/10.1098/rspb.2005.3335
2004
Restif, O. and Koella, JC., 2004. Concurrent evolution of resistance and tolerance to pathogens. Am Nat, v. 164
Doi: http://doi.org/10.1086/423713
2003
Restif, O. and Koella, JC., 2003. Shared control of epidemiological traits in a coevolutionary model of host-parasite interactions. Am Nat, v. 161
Doi: http://doi.org/10.1086/375171
2001
Koella, JC. and Restif, O., 2001. Coevolution of parasite virulence and host life history ECOL LETT, v. 4
Restif, O., Hochberg, ME. and Koella, JC., 2001. Virulence and age at reproduction: new insights into host-parasite coevolution J EVOLUTION BIOL, v. 14