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Cambridge Public Health

 

Epidemic modelling including parameter estimation, stochastic modelling, coupling of epidemiological with economic and with evolutionary models, spatio-temporal models: mostly applied to plant and crop disease but with applications to human and livestock disease.
http://www.plantsci.cam.ac.uk/directory/gilligan-chris/

Publications from Elements

Journal articles

2024 (Accepted for publication)

  • Retkute, R. and Gilligan, CA., 2024 (Accepted for publication). Bayesian inference for multiple datasets Stats,
  • 2023 (Accepted for publication)

  • Webb, CR., Avramidis, E., Castle, MD., Stutt, ROH. and Gilligan, CA., 2023 (Accepted for publication). Modelling the spread of tree pests and pathogens in urban forests Urban Forestry and Urban Greening, v. 86
    Doi: http://doi.org/10.1016/j.ufug.2023.128036
  • 2023

  • Godding, D., Stutt, ROJH., Alicai, T., Abidrabo, P., Okao-Okuja, G. and Gilligan, CA., 2023. Developing a predictive model for an emerging epidemic on cassava in sub-Saharan Africa. Sci Rep, v. 13
    Doi: http://doi.org/10.1038/s41598-023-38819-x
  • Donnelly, R. and Gilligan, CA., 2023. A new method for the analysis of access period experiments, illustrated with whitefly-borne cassava mosaic begomovirus. PLoS Comput Biol, v. 19
    Doi: http://doi.org/10.1371/journal.pcbi.1011291
  • Stutt, ROJH., Castle, MD., Markwell, P., Baker, R. and Gilligan, CA., 2023. An integrated model for pre- and post-harvest aflatoxin contamination in maize. NPJ Sci Food, v. 7
    Doi: http://doi.org/10.1038/s41538-023-00238-7
  • Nguyen, V-A., Bartels, DW. and Gilligan, CA., 2023. Modelling the spread and mitigation of an emerging vector-borne pathogen: Citrus greening in the U.S. PLoS Comput Biol, v. 19
    Doi: http://doi.org/10.1371/journal.pcbi.1010156
  • Meyer, M., Thurston, W., Smith, JW., Schumacher, A., Millington, SC., Hodson, DP., Cressman, K. and Gilligan, CA., 2023. Three-Dimensional Visualization of Long-Range Atmospheric Transport of Crop Pathogens and Insect Pests Atmosphere, v. 14
    Doi: http://doi.org/10.3390/atmos14060910
  • Bonnéry, DB., Pretorius, L-S., Jooste, AEC., Geering, ADW. and Gilligan, CA., 2023. Rational design of a survey protocol for avocado sunblotch viroid in commercial orchards to demonstrate pest freedom. PLoS One, v. 18
    Doi: http://doi.org/10.1371/journal.pone.0277725
  • 2022

  • Donnelly, R. and Gilligan, CA., 2022. The role of pathogen-mediated insect superabundance in the East African emergence of a plant virus. J Ecol, v. 110
    Doi: http://doi.org/10.1111/1365-2745.13854
  • 2021 (Accepted for publication)

  • Webb, CR., Mona, T. and Gilligan, CA., 2021 (Accepted for publication). Predicting the potential for spread of emerald ash borer (Agrilus planipennis) in Great Britain: What can we learn from other affected areas? Plants, People, Planet,
    Doi: http://doi.org/10.1002/ppp3.10195
  • 2021

  • Meyer, M., Bacha, N., Tesfaye, T., Alemayehu, Y., Abera, E., Hundie, B., Woldeab, G., Girma, B., Gemechu, A., Negash, T., Mideksa, T., Smith, J., Jaleta, M., Hodson, D. and Gilligan, CA., 2021. Wheat rust epidemics damage Ethiopian wheat production: A decade of field disease surveillance reveals national-scale trends in past outbreaks. PLoS One, v. 16
    Doi: http://doi.org/10.1371/journal.pone.0245697
  • Suprunenko, YF., Cornell, SJ. and Gilligan, CA., 2021. Analytical approximation for invasion and endemic thresholds, and the optimal control of epidemics in spatially explicit individual-based models. J R Soc Interface, v. 18
    Doi: http://doi.org/10.1098/rsif.2020.0966
  • Ristaino, JB., Anderson, PK., Bebber, DP., Brauman, KA., Cunniffe, NJ., Fedoroff, NV., Finegold, C., Garrett, KA., Gilligan, CA., Jones, CM., Martin, MD., MacDonald, GK., Neenan, P., Records, A., Schmale, DG., Tateosian, L. and Wei, Q., 2021. The persistent threat of emerging plant disease pandemics to global food security. Proc Natl Acad Sci U S A, v. 118
    Doi: http://doi.org/10.1073/pnas.2022239118
  • Suprunenko, YF., Castle, MD., Webb, CR., Branson, J., Hoppit, A. and Gilligan, CA., 2021. Estimating expansion of the range of oak processionary moth (Thaumetopoea processionea) in the UK from 2006 to 2019 AGRICULTURAL AND FOREST ENTOMOLOGY,
    Doi: http://doi.org/10.1111/afe.12468
  • Retkute, R., Hinton, RGK., Cressman, K. and Gilligan, CA., 2021. Regional differences in control operations during the 2019–2021 desert locust upsurge Agronomy, v. 11
    Doi: http://doi.org/10.3390/agronomy11122529
  • Szyniszewska, AM., Chikoti, PC., Tembo, M., Mulenga, R., Gilligan, CA., van den Bosch, F. and McQuaid, CF., 2021. Smallholder Cassava Planting Material Movement and Grower Behavior in Zambia: Implications for the Management of Cassava Virus Diseases. Phytopathology, v. 111
    Doi: http://doi.org/10.1094/PHYTO-06-20-0215-R
  • 2020 (Published online)

  • Ferris, AC., Stutt, ROJH., Godding, D. and Gilligan, CA., 2020 (Published online). Computational models to improve surveillance for cassava brown streak disease and minimize yield loss PLOS Computational Biology, v. 16
    Doi: http://doi.org/10.1371/journal.pcbi.1007823
  • 2020 (Accepted for publication)

  • Donnelly, R., Sikazwe, GW. and Gilligan, CA., 2020 (Accepted for publication). Estimating epidemiological parameters from experiments in vector access to host plants, the method of matching gradients PLoS Computational Biology,
  • Watkinson-Powell, B., Gilligan, C. and Cunniffe, NJ., 2020 (Accepted for publication). When does spatial diversification usefully maximise the durability of crop disease resistance? Phytopathology®,
    Doi: http://doi.org/10.1094/phyto-07-19-0261-r
  • Donnelly, R. and Gilligan, CA., 2020 (Accepted for publication). What is pathogen-mediated insect superabundance? Journal of the Royal Society Interface,
  • Wamonje, F., Tungadi, T., Murphy, A., Pate, A., Woodcock, C., Caulfield, J., Mutuku, JM., Cunniffe, N., Bruce, T., Gilligan, C., Pickett, J. and Carr, J., 2020 (Accepted for publication). Three aphid-transmitted viruses encourage vector migration from infected common bean (Phaseolus vulgaris) plants through a combination of volatile and surface cues Frontiers in Plant Science,
  • 2020

  • Thompson, RN., Gilligan, CA. and Cunniffe, NJ., 2020. using practical definitions of a severe epidemic ... Journal of the Royal Society Interface, v. 17
    Doi: http://doi.org/10.1098/rsif.2020.0690rsif20200690
  • Stutt, ROJH., Retkute, R., Bradley, M., Gilligan, CA. and Colvin, J., 2020. A modelling framework to assess the likely effectiveness of facemasks in combination with 'lock-down' in managing the COVID-19 pandemic PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, v. 476
    Doi: http://doi.org/10.1098/rspa.2020.0376
  • Thompson, RN., Gilligan, CA. and Cunniffe, NJ., 2020. Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic. J R Soc Interface, v. 17
    Doi: http://doi.org/10.1098/rsif.2020.0690
  • Roberts, M., Gilligan, CA., Kleczkowski, A., Hanley, N., Whalley, AE. and Healey, JR., 2020. The Effect of Forest Management Options on Forest Resilience to Pathogens Frontiers in Forests and Global Change, v. 3
    Doi: http://doi.org/10.3389/ffgc.2020.00007
  • 2019 (Accepted for publication)

  • Carr, J., Tungadi, T., Donnelly, R., Bravo-Cazar, A., Rhee, S-J., Watt, L., Mutuku, JM., Wamonje, F., Murphy, A., Arinaitwe, W., Pate, A., Cunniffe, N. and Gilligan, C., 2019 (Accepted for publication). Modelling and manipulation of aphid-mediated spread of non-persistently transmitted viruses Virus Research,
  • Wamonje, F., Donnelly, R., Tungadi, T., Murphy, AM., Pate, AE., Woodcock, C., Caulfield, J., Mutuku, JM., Bruce, TJA., Gilligan, CA., Pickett, JA. and Carr, J., 2019 (Accepted for publication). Different plant viruses induce changes in feeding behaviour of specialist and generalist aphids on common bean that are likely to enhance virus transmission Frontiers in Plant Science,
  • 2019

  • Allen-Sader, C., Thurston, W., Meyer, M., Nure, E., Bacha, N., Alemayehu, Y., Stutt, ROJH., Safka, D., Craig, AP., Derso, E., Burgin, LE., Millington, SC., Hort, MC., Hodson, DP. and Gilligan, CA., 2019. An early warning system to predict and mitigate wheat rust diseases in Ethiopia Environmental Research Letters, v. 14
    Doi: http://doi.org/10.1088/1748-9326/ab4034
  • Visser, B., Meyer, M., Park, RF., Gilligan, CA., Burgin, LE., Hort, MC., Hodson, DP. and Pretorius, ZA., 2019. Microsatellite Analysis and Urediniospore Dispersal Simulations Support the Movement of Puccinia graminis f. sp. tritici from Southern Africa to Australia. Phytopathology, v. 109
    Doi: http://doi.org/10.1094/PHYTO-04-18-0110-R
  • Alonso Chavez, V., Gilligan, CA. and van den Bosch, F., 2019. Variability in commercial demand for tree saplings affects the probability of introducing exotic forest diseases. J Appl Ecol, v. 56
    Doi: http://doi.org/10.1111/1365-2664.13242
  • Alicai, T., Szyniszewska, AM., Omongo, CA., Abidrabo, P., Okao-Okuja, G., Baguma, Y., Ogwok, E., Kawuki, R., Esuma, W., Tairo, F., Bua, A., Legg, JP., Stutt, ROJH., Godding, D., Sseruwagi, P., Ndunguru, J. and Gilligan, CA., 2019. Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017. Sci Data, v. 6
    Doi: http://doi.org/10.1038/s41597-019-0334-9
  • Donnelly, R., Cunniffe, N., Carr, J. and Gilligan, C., 2019. Pathogenic modification of plants enhances long-distance dispersal of non-persistently transmitted viruses to new hosts. Ecology, v. 100
    Doi: http://doi.org/10.1002/ecy.2725
  • Dangerfield, CE., Vyska, M. and Gilligan, CA., 2019. Resource Allocation for Epidemic Control Across Multiple Sub-populations. Bull Math Biol, v. 81
    Doi: http://doi.org/10.1007/s11538-019-00584-2
  • Filipe, JAN., Cobb, RC., Salmon, M. and Gilligan, CA., 2019. Management strategies for conservation of tanoak in california forests threatened by sudden oak death: A disease-community feedback modelling approach Forests, v. 10
    Doi: http://doi.org/10.3390/F10121103
  • 2018 (Accepted for publication)

  • Bussell, E., Dangerfield, CE., Gilligan, CA. and Cunniffe, NJ., 2018 (Accepted for publication). Applying optimal control theory to complex epidemiological models to inform real-world disease management Philosophical Transactions of the Royal Society B: Biological Sciences,
    Doi: http://doi.org/10.1098/rstb.2018.0284
  • Thompson, R., Gilligan, C. and Cunniffe, NJ., 2018 (Accepted for publication). Control fast or control smart: when should invading pathogens be controlled? PLoS Computational Biology,
  • 2018

  • Craig, AP., Cunniffe, NJ., Parry, M., Laranjeira, FF. and Gilligan, CA., 2018. Grower and regulator conflict in management of the citrus disease Huanglongbing in Brazil: A modelling study Journal of Applied Ecology,
    Doi: http://doi.org/10.1111/1365-2664.13122
  • Carr, JP., Donnelly, R., Tungadi, T., Murphy, AM., Jiang, S., Bravo-Cazar, A., Yoon, J-Y., Cunniffe, NJ., Glover, BJ. and Gilligan, CA., 2018. Viral Manipulation of Plant Stress Responses and Host Interactions With Insects. Adv Virus Res, v. 102
    Doi: http://doi.org/10.1016/bs.aivir.2018.06.004
  • Adrakey, HK., Streftaris, G., Cunniffe, NJ., Gottwald, TR., Gilligan, CA. and Gibson, GJ., 2018. Evidence-based controls for epidemics using spatio-temporal stochastic models in a Bayesian framework. Journal of the Royal Society Interface, v. 14
    Doi: http://doi.org/10.1098/rsif.2017.0386
  • 2017 (Accepted for publication)

  • Hyatt-Twynam, SR., Parnell, S., Stutt, ROJH., Gottwald, TR., Gilligan, CA. and Cunniffe, NJ., 2017 (Accepted for publication). Risk-based management of invading plant disease New Phytologist,
    Doi: http://doi.org/10.1111/nph.14488
  • Dangerfield, CE., Gilligan, CA., Whalley, AE. and Hanley, N., 2017 (Accepted for publication). What a difference a stochastic process makes: epidemiological-based real options models of optimal treatment of disease Environmental and Resource Economics,
    Doi: http://doi.org/10.1007/s10640-017-0168-x
  • 2017

  • Parnell, S., van den Bosch, F., Gottwald, T. and Gilligan, CA., 2017. Surveillance to Inform Control of Emerging Plant Diseases: An Epidemiological Perspective. Annu Rev Phytopathol, v. 55
    Doi: http://doi.org/10.1146/annurev-phyto-080516-035334
  • McQuaid, CF., van den Bosch, F., Szyniszewska, A., Alicai, T., Pariyo, A., Chikoti, PC. and Gilligan, CA., 2017. Spatial dynamics and control of a crop pathogen with mixed-mode transmission. PLoS Comput Biol, v. 13
    Doi: http://doi.org/10.1371/journal.pcbi.1005654
  • Meyer, M., Burgin, L., Hort, MC., Hodson, DP. and Gilligan, CA., 2017. Large-Scale Atmospheric Dispersal Simulations Identify Likely Airborne Incursion Routes of Wheat Stem Rust Into Ethiopia. Phytopathology, v. 107
    Doi: http://doi.org/10.1094/PHYTO-01-17-0035-FI
  • Hoscheit, P., Geeraert, S., Beaunée, G., Monod, H., Gilligan, CA., Filipe, JAN., Vergu, E. and Moslonka-Lefebvre, M., 2017. Dynamical network models for cattle trade: Towards economy-based epidemic risk assessment Journal of Complex Networks, v. 5
    Doi: http://doi.org/10.1093/comnet/cnw026
  • Meyer, M., Cox, JA., Hitchings, MDT., Burgin, L., Hort, MC., Hodson, DP. and Gilligan, CA., 2017. Quantifying airborne dispersal routes of pathogens over continents to safeguard global wheat supply. Nat Plants, v. 3
    Doi: http://doi.org/10.1038/s41477-017-0017-5
  • Meyer, M., Burgin, L., Hort, MC., Hodson, DP. and Gilligan, CA., 2017. Large-Scale Atmospheric Dispersal Simulations Identify Likely Airborne Incursion Routes of Wheat Stem Rust Into Ethiopia PHYTOPATHOLOGY, v. 107
    Doi: http://doi.org/10.1094/PHYTO-01-17-0035-F1
  • McQuaid, CF., Gilligan, CA. and van den Bosch, F., 2017. Considering behaviour to ensure the success of a disease control strategy. R Soc Open Sci, v. 4
    Doi: http://doi.org/10.1098/rsos.170721
  • 2016

  • Taylor, RA., Mordecai, EA., Gilligan, CA., Rohr, JR. and Johnson, LR., 2016. Mathematical models are a powerful method to understand and control the spread of Huanglongbing. PeerJ, v. 4
    Doi: http://doi.org/10.7717/peerj.2642
  • Taylor, RA., Mordecai, E., Gilligan, CA., Rohr, JR. and Johnson, LR., 2016. Mathematical models are a powerful method to understand and control the spread of Huanglongbing
    Doi: 10.7287/peerj.preprints.2059v1
  • Vyska, M., Cunniffe, N. and Gilligan, C., 2016. Trade-off between disease resistance and crop yield: a landscape-scale mathematical modelling perspective Journal of The Royal Society Interface, v. 13
    Doi: http://doi.org/10.1098/rsif.2016.0451
  • Taylor, RA., Mordecai, E., Gilligan, CA., Rohr, JR. and Johnson, LR., 2016. Mathematical models are a powerful method to understand and control the spread of Huanglongbing
    Doi: 10.7287/peerj.preprints.2059
  • Thompson, RN., Cobb, RC., Gilligan, CA. and Cunniffe, NJ., 2016. Management of invading pathogens should be informed by epidemiology rather than administrative boundaries. Ecol Modell, v. 324
    Doi: http://doi.org/10.1016/j.ecolmodel.2015.12.014
  • Moslonka-Lefebvre, M., Gilligan, CA., Monod, H., Belloc, C., Ezanno, P., Filipe, JAN. and Vergu, E., 2016. Market analyses of livestock trade networks to inform the prevention of joint economic and epidemiological risks. J R Soc Interface, v. 13
    Doi: http://doi.org/10.1098/rsif.2015.1099
  • Thompson, RN., Gilligan, CA. and Cunniffe, NJ., 2016. Detecting Presymptomatic Infection Is Necessary to Forecast Major Epidemics in the Earliest Stages of Infectious Disease Outbreaks. PLoS Comput Biol, v. 12
    Doi: http://doi.org/10.1371/journal.pcbi.1004836
  • Cunniffe, NJ., Cobb, RC., Meentemeyer, RK., Rizzo, DM. and Gilligan, CA., 2016. Modeling when, where, and how to manage a forest epidemic, motivated by sudden oak death in California. Proc Natl Acad Sci U S A, v. 113
    Doi: http://doi.org/10.1073/pnas.1602153113
  • Vyska, M. and Gilligan, C., 2016. Complex Dynamical Behaviour in an Epidemic Model with Control. Bull Math Biol, v. 78
    Doi: http://doi.org/10.1007/s11538-016-0217-6
  • 2015

  • Cunniffe, NJ., Koskella, B., Metcalf, CJE., Parnell, S., Gottwald, TR. and Gilligan, CA., 2015. Thirteen challenges in modelling plant diseases. Epidemics, v. 10
    Doi: http://doi.org/10.1016/j.epidem.2014.06.002
  • Cunniffe, NJ., Stutt, ROJH., DeSimone, RE., Gottwald, TR. and Gilligan, CA., 2015. Optimising and communicating options for the control of invasive plant disease when there is epidemiological uncertainty. PLoS Comput Biol, v. 11
    Doi: http://doi.org/10.1371/journal.pcbi.1004211
  • Olivera, P., Newcomb, M., Szabo, LJ., Rouse, M., Johnson, J., Gale, S., Luster, DG., Hodson, D., Cox, JA., Burgin, L., Hort, M., Gilligan, CA., Patpour, M., Justesen, AF., Hovmøller, MS., Woldeab, G., Hailu, E., Hundie, B., Tadesse, K., Pumphrey, M., Singh, RP. and Jin, Y., 2015. Phenotypic and Genotypic Characterization of Race TKTTF of Puccinia graminis f. sp. tritici that Caused a Wheat Stem Rust Epidemic in Southern Ethiopia in 2013-14. Phytopathology, v. 105
    Doi: http://doi.org/10.1094/PHYTO-11-14-0302-FI
  • Cunniffe, NJ., Koskella, B., E Metcalf, CJ., Parnell, S., Gottwald, TR. and Gilligan, CA., 2015. Thirteen challenges in modelling plant diseases Epidemics, v. 10
    Doi: http://doi.org/10.1016/j.epidem.2014.06.002
  • Moslonka-Lefebvre, M., Monod, H., Gilligan, CA., Vergu, E. and Filipe, JAN., 2015. Epidemics in markets with trade friction and imperfect transactions. J Theor Biol, v. 374
    Doi: http://doi.org/10.1016/j.jtbi.2015.02.025
  • 2014

  • Cunniffe, NJ., Laranjeira, FF., Neri, FM., DeSimone, RE. and Gilligan, CA., 2014. Cost-effective control of plant disease when epidemiological knowledge is incomplete: modelling Bahia bark scaling of citrus. PLoS Computational Biology, v. 10
    Doi: http://doi.org/10.1371/journal.pcbi.1003753
  • Ndeffo Mbah, ML. and Gilligan, CA., 2014. Optimal control of disease infestations on a lattice. Math Med Biol, v. 31
    Doi: http://doi.org/10.1093/imammb/dqt012
  • Bajželj, B., Richards, KS., Allwood, JM., Smith, P., Dennis, JS., Curmi, E. and Gilligan, CA., 2014. Importance of food-demand management for climate mitigation Nature Climate Change, v. 4
    Doi: http://doi.org/10.1038/nclimate2353
  • Westwood, JH., Lewsey, MG., Murphy, AM., Tungadi, T., Bates, A., Gilligan, CA. and Carr, JP., 2014. Interference with jasmonic acid-regulated gene expression is a general property of viral suppressors of RNA silencing but only partly explains virus-induced changes in plant-aphid interactions. J Gen Virol, v. 95
    Doi: http://doi.org/10.1099/vir.0.060624-0
  • Leclerc, M., Doré, T., Gilligan, CA., Lucas, P. and Filipe, JAN., 2014. Estimating the delay between host infection and disease (incubation period) and assessing its significance to the epidemiology of plant diseases. PLoS One, v. 9
    Doi: http://doi.org/10.1371/journal.pone.0086568
  • Boyd, IL., Freer-Smith, PH., Gilligan, CA. and Godfray, HCJ., 2014. Response Science, v. 343
    Doi: http://doi.org/10.1126/science.343.6168.249-b
  • Boyd, IL., Freer-Smith, PH., Gilligan, CA. and Godfray, HCJ., 2014. Urban forests on the front line--response. Science, v. 343
    Doi: http://doi.org/10.1126/science.343.6168.249-b
  • Van den Berg, F., Lannou, C., Gilligan, CA. and van de Bosch, F., 2014. Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs. Evolutionary Applications, v. 7
    Doi: http://doi.org/10.1111/eva.12130
  • Neri, FM., Cook, AR., Gibson, GJ., Gottwald, TR. and Gilligan, CA., 2014. Bayesian analysis for inference of an emerging epidemic: citrus canker in urban landscapes. PLoS Computational Biology, v. 10
    Doi: http://doi.org/10.1371/journal.pcbi.1003587
  • Parry, M., Gibson, GJ., Parnell, S., Gottwald, TR., Irey, MS., Gast, TC. and Gilligan, CA., 2014. Bayesian inference for an emerging arboreal epidemic in the presence of control. Proc Natl Acad Sci U S A, v. 111
    Doi: http://doi.org/10.1073/pnas.1310997111
  • 2013

  • van den Berg, F., Gaucel, S., Lannou, C., Gilligan, CA. and van den Bosch, F., 2013. High levels of auto-infection in plant pathogens favour short latent periods: A theoretical approach Evolutionary Ecology, v. 27
    Doi: http://doi.org/10.1007/s10682-012-9602-2
  • Leclerc, M., Doré, T., Gilligan, CA., Lucas, P. and Filipe, JAN., 2013. Host Growth Can Cause Invasive Spread of Crops by Soilborne Pathogens PLoS ONE, v. 8
    Doi: http://doi.org/10.1371/journal.pone.0063003
  • Gosme, M., Lebreton, L., Sarniguet, A., Lucas, P., Gilligan, CA. and Bailey, DJ., 2013. A new model for the pathozone of the take-all pathogen, Gaeumannomyces graminis var. tritici Annals of Applied Biology,
  • Poggi, S., Neri, FM., Deytieux, V., Bates, A., Otten, W., Gilligan, CA. and Bailey, DJ., 2013. Percolation-based risk index for pathogen invasion: Application to soilborne disease in propagation systems Phytopathology, v. 103
    Doi: http://doi.org/10.1094/PHYTO-02-13-0033-R
  • Gosme, M., Lebreton, L., Sarniguet, A., Lucas, P., Gilligan, CA. and Bailey, DJ., 2013. A new model for the pathozone of the take-all pathogen, Gaeumannomyces graminis var. Tritici Annals of Applied Biology, v. 163
    Doi: http://doi.org/10.1111/aab.12060
  • Boyd, IL., Freer-Smith, PH., Gilligan, CA. and Godfray, HCJ., 2013. The consequence of tree pests and diseases for ecosystem services Science, v. 342
    Doi: http://doi.org/10.1126/science.1235773
  • Cobb, RC., Rizzo, DM., Hayden, KJ., Garbelotto, M., Filipe, JAN., Gilligan, CA., Dillon, WW., Meentemeyer, RK., Valachovic, YS., Goheen, E., Swiecki, TJ., Hansen, EM. and Frankel, SJ., 2013. Biodiversity Conservation in the Face of Dramatic Forest Disease: An Integrated Conservation Strategy for Tanoak (<i>Notholithocarpus densiflorus</i>) Threatened by Sudden Oak Death Madroño, v. 60
    Doi: 10.3120/0024-9637-60.2.151
  • Lo Iacono, G., van den Bosch, F. and Gilligan, CA., 2013. Durable Resistance to Crop Pathogens: An Epidemiological Framework to Predict Risk under Uncertainty PLoS Computational Biology, v. 9
    Doi: http://doi.org/10.1371/journal.pcbi.1002870
  • Motisi, N., Poggi, S., Filipe, JAN., Lucas, P., Doré, T., Montfort, F., Gilligan, CA. and Bailey, DJ., 2013. Epidemiological analysis of the effects of biofumigation for biological control of root rot in sugar beet Plant Pathology, v. 62
    Doi: http://doi.org/10.1111/j.1365-3059.2012.02618.x
  • 2012

  • Ludlam, JJ., Gibson, GJ., Otten, W. and Gilligan, CA., 2012. Applications of percolation theory to fungal spread with synergy. J R Soc Interface, v. 9
    Doi: http://doi.org/10.1098/rsif.2011.0506
  • Kleczkowski, A., Oles, K., Gudowska-Nowak, E. and Gilligan, CA., 2012. Searching for the most cost-effective strategy for controlling epidemics spreading on regular and small-world networks J R SOC INTERFACE, v. 9
    Doi: http://doi.org/10.1098/rsif.2011.0216
  • Filipe, JAN., Cobb, RC., Meentemeyer, RK., Lee, CA., Valachovic, YS., Cook, AR., Rizzo, DM. and Gilligan, CA., 2012. Landscape epidemiology and control of pathogens with cryptic and long-distance dispersal: sudden oak death in northern Californian forests. PLoS Comput Biol, v. 8
    Doi: http://doi.org/10.1371/journal.pcbi.1002328
  • Cobb, RC., Filipe, JAN., Meentemeyer, RK., Gilligan, CA. and Rizzo, DM., 2012. Ecosystem transformation by emerging infectious disease: Loss of large tanoak from California forests Journal of Ecology, v. 100
    Doi: http://doi.org/10.1111/j.1365-2745.2012.01960.x
  • Motisi, N., Poggi, S., Filipe, JAN., Lucas, P., Doré, T., Montfort, F., Gilligan, CA. and Bailey, DJ., 2012. Epidemiological analysis of the effects of biofumigation for biological control of root rot in sugar beet Plant Pathology,
  • Pérez-Reche, FJ., Neri, FM., Taraskin, SN. and Gilligan, CA., 2012. Prediction of invasion from the early stage of an epidemic. J R Soc Interface, v. 9
    Doi: http://doi.org/10.1098/rsif.2012.0130
  • Castle, MD. and Gilligan, CA., 2012. An epidemiological framework for modelling fungicide dynamics and control. PLoS One, v. 7
    Doi: http://doi.org/10.1371/journal.pone.0040941
  • van den Berg, F., Gaucel, S., Lannou, C., Gilligan, CA. and van den Bosch, F., 2012. High levels of auto-infection in plant pathogens favour short latent periods: a theoretical approach Evolutionary Ecology,
  • Perez-Reche, FJ., Taraskin, SN., Otten, W., Viana, MP., Costa, LDF. and Gilligan, CA., 2012. Prominent effect of soil network heterogeneity on microbial invasion Phys. Rev. Lett., v. 109
  • 2011 (Accepted for publication)

  • Cunniffe, NJ., Stutt, RJOH., van den Bosch, F. and Gilligan, CA., 2011 (Accepted for publication). Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease Phytopathology,
  • 2011

  • Handford, TP., Pérez-Reche, FJ., Taraskin, SN., Costa, LDF., Miazaki, M., Neri, FM. and Gilligan, CA., 2011. Epidemics in networks of spatially correlated three-dimensional root-branching structures. J R Soc Interface, v. 8
    Doi: http://doi.org/10.1098/rsif.2010.0296
  • Meentemeyer, RK., Cunniffe, NJ, , Cook, AR, , Filipe, JAN, , Hunter, RD, , Rizzo, DM, and Gilligan, CA., 2011. Epidemiological modeling of invasion in heterogeneous landscapes: spread of sudden oak death in California (1990–2030) Ecosphere, v. 2
    Doi: http://doi.org/10.1890/ES10-00192.1
  • Handford, TP., Perez-Reche, FJ., Taraskin, SN., Da Fontoura Costa, L., Miazaki, M., Neri, FM. and Gilligan, CA., 2011. Epidemics in anisotropic networks of roots Communications in Computer and Information Science, v. 116 CCIS
    Doi: http://doi.org/10.1007/978-3-642-25501-4_15
  • Kovacs, K., Václavík, T., Haight, RG., Pang, A., Cunniffe, NJ., Gilligan, CA. and Meentemeyer, RK., 2011. Predicting the economic costs and property value losses attributed to sudden oak death damage in California (2010-2020) Journal of Environmental Management,
  • Kovacs, K., Václavík, T., Haight, RG., Pang, A., Cunniffe, NJ., Gilligan, CA. and Meentemeyer, RK., 2011. Predicting the economic costs and property value losses attributed to sudden oak death damage in California (2010-2020). J Environ Manage, v. 92
    Doi: http://doi.org/10.1016/j.jenvman.2010.12.018
  • Cunniffe, NJ. and Gilligan, CA., 2011. A theoretical framework for biological control of soil-borne plant pathogens: Identifying effective strategies. J Theor Biol, v. 278
    Doi: http://doi.org/10.1016/j.jtbi.2011.02.023
  • Demon, I., Cunniffe, NJ., Marchant, BP., Gilligan, CA. and van den Bosch, F., 2011. Spatial sampling to detect an invasive pathogen outside of an eradication zone. Phytopathology, v. 101
    Doi: http://doi.org/10.1094/PHYTO-05-09-0120
  • Perez-Reche, FJ., Ludlam, JJ., Taraskin, SN. and Gilligan, CA., 2011. Synergy in Spreading Processes: From Exploitative to Explorative Foraging Strategies PHYS REV LETT, v. 106
    Doi: http://doi.org/10.1103/PhysRevLett.106.218701
  • Neri, FM., Bates, A., Füchtbauer, WS., Pérez-Reche, FJ., Taraskin, SN., Otten, W., Bailey, DJ. and Gilligan, CA., 2011. The effect of heterogeneity on invasion in spatial epidemics: from theory to experimental evidence in a model system. PLoS Comput Biol, v. 7
    Doi: http://doi.org/10.1371/journal.pcbi.1002174
  • Mbah, MLN. and Gilligan, CA., 2011. Resource allocation for epidemic control in metapopulations PLoS ONE, v. 6
    Doi: http://doi.org/10.1371/journal.pone.0024577
  • Neri, FM., Pérez-Reche, FJ., Taraskin, SN. and Gilligan, CA., 2011. Heterogeneity in susceptible-infected-removed (SIR) epidemics on lattices. J R Soc Interface, v. 8
    Doi: http://doi.org/10.1098/rsif.2010.0325
  • 2010

  • Ndeffo Mbah, ML. and Gilligan, CA., 2010. Balancing detection and eradication for control of epidemics: sudden oak death in mixed-species stands. PLoS One, v. 5
    Doi: http://doi.org/10.1371/journal.pone.0012317
  • Pérez-Reche, FJ., Taraskin, SN., Costa, LDF., Neri, FM. and Gilligan, CA., 2010. Complexity and anisotropy in host morphology make populations less susceptible to epidemic outbreaks. J R Soc Interface, v. 7
    Doi: http://doi.org/10.1098/rsif.2009.0475
  • Parnell, S., Gottwald, TR., Gilligan, CA., Cunniffe, NJ. and van den Bosch, F., 2010. The Effect of Landscape Pattern on the Optimal Eradication Zone of an Invading Epidemic PHYTOPATHOLOGY, v. 100
    Doi: http://doi.org/10.1094/PHYTO-100-7-0638
  • Mbah, MLN., Forster, GA., Wesseler, JH. and Gilligan, CA., 2010. Economically optimal timing for crop disease control under uncertainty: an options approach. J R Soc Interface, v. 7
    Doi: http://doi.org/10.1098/rsif.2010.0056
  • Cunniffe, NJ. and Gilligan, CA., 2010. Invasion, persistence and control in epidemic models for plant pathogens: the effect of host demography. J R Soc Interface, v. 7
    Doi: http://doi.org/10.1098/rsif.2009.0226
  • van den Berg, F., Gilligan, CA., Gerdessen, JC., Gregoire, LAH. and van den Bosch, F., 2010. Optimal weed management in crop rotations: incorporating economics is crucial WEED RES, v. 50
    Doi: http://doi.org/10.1111/j.1365-3180.2010.00787.x
  • van den Berg, F., Gilligan, CA., Bailey, DJ. and van den Bosch, F., 2010. Periodicity in Host Availability Does Not Account for Evolutionary Branching as Observed in Many Plant Pathogens: An Application to Gaeumannomyces graminis var. tritici PHYTOPATHOLOGY, v. 100
    Doi: http://doi.org/10.1094/PHYTO-10-09-0282
  • Ndeffo Mbah, ML. and Gilligan, CA., 2010. Balancing detection and eradication for control of epidemics: sudden oak death in mixed-species stands. PloS one, v. 5
  • Mbah, MLN. and Gilligan, CA., 2010. Optimization of control strategies for epidemics in heterogeneous populations with symmetric and asymmetric transmission. J Theor Biol, v. 262
    Doi: http://doi.org/10.1016/j.jtbi.2009.11.001
  • 2009

  • Parnell, S., Gottwald, TR., van den Bosch, F. and Gilligan, CA., 2009. Optimal Strategies for the Eradication of Asiatic Citrus Canker in Heterogeneous Host Landscapes PHYTOPATHOLOGY, v. 99
    Doi: http://doi.org/10.1094/PHYTO-99-12-1370
  • Dybiec, B., Kleczkowski, A. and Gilligan, CA., 2009. Modelling control of epidemics spreading by long-range interactions J R SOC INTERFACE, v. 6
    Doi: http://doi.org/10.1098/rsif.2008.0468
  • Rowthorn, RE., Laxminarayan, R. and Gilligan, CA., 2009. Optimal control of epidemics in metapopulations. J R Soc Interface, v. 6
    Doi: http://doi.org/10.1098/rsif.2008.0402
  • Bailey, DJ., Paveley, N., Spink, J., Lucas, P. and Gilligan, CA., 2009. Epidemiological Analysis of Take-All Decline in Winter Wheat PHYTOPATHOLOGY, v. 99
    Doi: http://doi.org/10.1094/PHYTO-99-7-0861
  • 2008

  • Gilligan, CA. and van den Bosch, F., 2008. Epidemiological models for invasion and persistence of pathogens. Annu Rev Phytopathol, v. 46
    Doi: http://doi.org/10.1146/annurev.phyto.45.062806.094357
  • Cook, AR., Gibson, GJ., Gottwald, TR. and Gilligan, CA., 2008. Constructing the effect of alternative intervention strategies on historic epidemics. J R Soc Interface, v. 5
    Doi: http://doi.org/10.1098/rsif.2008.0030
  • Parnell, S., Gilligan, CA., Lucas, JA., Bock, CH. and van den Bosch, F., 2008. Changes in fungicide sensitivity and relative species abundance in Oculimacula yallundae and O-acuformis populations (eyespot disease of cereals) in Western Europe PLANT PATHOL, v. 57
    Doi: http://doi.org/10.1111/j.1365-3059.2007.01786.x
  • Cunniffe, NJ. and Gilligan, CA., 2008. Scaling from mycelial growth to infection dynamics: a reaction diffusion approach FUNGAL ECOL, v. 1
    Doi: http://doi.org/10.1016/j.funeco.2008.10.007
  • Bailey, DJ., Biran, GL., Kerry, BR. and Gilligan, CA., 2008. Pathozone dynamics of Meloidogyne incognita in the rhizosphere of tomato plants in the presence and absence of the nematophagous fungus, Pochonia chlamydosporia PLANT PATHOL, v. 57
    Doi: http://doi.org/10.1111/j.1365-3059.2007.01776.x
  • Gilligan, CA., 2008. Sustainable agriculture and plant diseases: an epidemiological perspective. Philos Trans R Soc Lond B Biol Sci, v. 363
    Doi: http://doi.org/10.1098/rstb.2007.2181
  • Cook, AR., Gibson, GJ. and Gilligan, CA., 2008. Optimal observation times in experimental epidemic processes BIOMETRICS, v. 64
    Doi: http://doi.org/10.1111/j.1541-0420.2007.00931.x
  • Jeger, MJ., Lamour, A., Gilligan, CA. and Otten, W., 2008. A fungal growth model fitted to carbon-limited dynamics of Rhizoctonia solani NEW PHYTOL, v. 178
    Doi: http://doi.org/10.1111/j.1469-8137.2008.02394.x
  • van den Bosch, F. and Gilligan, CA., 2008. Models of fungicide resistance dynamics ANNU REV PHYTOPATHOL, v. 46
    Doi: http://doi.org/10.1146/annurev.phyto.011108.135838
  • 2007

  • van den Bosch, F., Jeger, MJ. and Gilligan, CA., 2007. Disease control and its selection for damaging plant virus strains in vegetatively propagated staple food crops; a theoretical assessment P R SOC B, v. 274
    Doi: http://doi.org/10.1098/rspb.2006.3715
  • Cook, AR., Otten, W., Marion, G., Gibson, GJ. and Gilligan, CA., 2007. Estimation of multiple transmission rates for epidemics in heterogeneous populations P NATL ACAD SCI USA, v. 104
    Doi: http://doi.org/10.1073/pnas.0706461104
  • Klein, E., Laxminarayan, R., Smith, DL. and Gilligan, CA., 2007. Economic incentives and mathematical models of disease ENVIRON DEV ECON, v. 12
    Doi: http://doi.org/10.1017/S1355770X0700383X
  • Kleczkowski, A. and Gilligan, CA., 2007. Parameter estimation and prediction for the course of a single epidemic outbreak of a plant disease. J R Soc Interface, v. 4
    Doi: http://doi.org/10.1098/rsif.2007.1036
  • Forster, GA. and Gilligan, CA., 2007. Optimizing the control of disease infestations at the landscape scale. Proc Natl Acad Sci U S A, v. 104
    Doi: http://doi.org/10.1073/pnas.0607900104
  • Kleczkowski, A. and Gilligan, CA., 2007. Parameter estimation and prediction for the course of a single epidemic outbreak of a plant disease Journal of the Royal Society Interface, v. 4
    Doi: http://doi.org/10.1098/rsif.2007.1036
  • Gilligan, CA., Truscott, JE. and Stacey, AJ., 2007. Impact of scale on the effectiveness of disease control strategies for epidemics with cryptic infection in a dynamical landscape: an example for a crop disease. J R Soc Interface, v. 4
    Doi: http://doi.org/10.1098/rsif.2007.1019
  • Hall, RJ., Gubbins, S. and Gilligan, CA., 2007. Evaluating the performance of chemical control in the presence of resistant pathogens. Bull Math Biol, v. 69
    Doi: http://doi.org/10.1007/s11538-006-9139-z
  • 2006

  • White, KAJ. and Gilligan, CA., 2006. The role of initial inoculum on epidemic dynamics J THEOR BIOL, v. 242
    Doi: http://doi.org/10.1016/j.jtbi.2006.04.004
  • Parnell, S., van den Bosch, F. and Gilligan, CA., 2006. Large-scale fungicide spray heterogeneity and the regional spread of resistant pathogen strains PHYTOPATHOLOGY, v. 96
  • Mertens, SK., Yearsley, JM., van den Bosch, F. and Gilligan, CA., 2006. Transient population dynamics in periodic matrix models: Methodology and effects of cyclic permutations ECOLOGY, v. 87
  • Bailey, DJ., Kleczkowski, A. and Gilligan, CA., 2006. An epidemiological analysis of the role of disease-induced root growth in the differential response of two cultivars of winter wheat to infection by Gaeumannomyces graminis var. tritici PHYTOPATHOLOGY, v. 96
    Doi: http://doi.org/10.1094/PHYTO-96-0510
  • Gibson, GJ., Otten, W., Filipe, JAN., Cook, A., Marion, G. and Gilligan, CA., 2006. Bayesian estimation for percolation models of disease spread in plant populations STAT COMPUT, v. 16
    Doi: http://doi.org/10.1007/s11222-006-0019-z
  • 2005

  • Taraskin, SN., Ludlam, JJ., Neugebauer, CJ. and Gilligan, CA., 2005. Extinction of epidemics in lattice models with quenched disorder. Phys Rev E Stat Nonlin Soft Matter Phys, v. 72
    Doi: http://doi.org/10.1103/PhysRevE.72.016111
  • Claessen, D., Gilligan, CA., Lutman, PJW. and van den Bosch, F., 2005. Which traits promote persistence of feral GM crops? Part 1: implications of environmental stochasticity OIKOS, v. 110
  • Claessen, D., Gilligan, CA. and van den Bosch, F., 2005. Which traits promote persistence of feral GM crops? Part 2: implications of metapopulation structure OIKOS, v. 110
  • Fitter, AH., Gilligan, CA., Hollingworth, K., Kleczkowski, A., Twyman, RM., Pitchford, JW. and NERC Soil Biodiversity Programme, , 2005. Biodiversity and ecosystem function in soil FUNCT ECOL, v. 19
    Doi: http://doi.org/10.1111/j.1365-2435.2005.00969.x
  • Otten, W., Filipe, JAN. and Gilligan, CA., 2005. Damping-off epidemics, contact structure, and disease transmission in mixed-species populations ECOLOGY, v. 86
  • Bailey, DJ., Paveley, N., Pillinger, C., Foulkes, J., Spink, J. and Gilligan, CA., 2005. Epidemiology and chemical control of take-all on seminal and adventitious roots of wheat PHYTOPATHOLOGY, v. 95
    Doi: http://doi.org/10.1094/PHYTO-95-0062
  • Parnell, S., Gilligan, CA. and van den Bosch, F., 2005. Small-scale fungicide spray heterogeneity and the coexistence of resistant and sensitive pathogen trains PHYTOPATHOLOGY, v. 95
    Doi: http://doi.org/10.1094/PHYTO-95-0632
  • 2004

  • Bailey, DJ. and Gilligan, CA., 2004. Modeling and analysis of disease-induced host growth in the epidemiology of take-all PHYTOPATHOLOGY, v. 94
  • Hall, RJ., Gubbins, S. and Gilligan, CA., 2004. Invasion of drug and pesticide resistance is determined by a trade-off between treatment efficacy and relative fitness. Bull Math Biol, v. 66
    Doi: http://doi.org/10.1016/j.bulm.2003.11.006
  • Filipe, JAN., Otten, W., Gibson, GJ. and Gilligan, CA., 2004. Inferring the dynamics of a spatial epidemic from time-series data. Bull Math Biol, v. 66
    Doi: http://doi.org/10.1016/j.bulm.2003.09.002
  • Gudelj, I., van den Bosch, F. and Gilligan, CA., 2004. Transmission rates and adaptive evolution of pathogens in sympatric heterogeneous plant populations P ROY SOC LOND B BIO, v. 271
    Doi: http://doi.org/10.1098/rspb.2004.2837
  • Stacey, AJ., Truscott, JE., Asher, MJC. and Gilligan, CA., 2004. A model for the invasion and spread of rhizomania in the United Kingdom: Implications for disease control strategies PHYTOPATHOLOGY, v. 94
  • Otten, W., Harris, K., Young, IM., Ritz, K. and Gilligan, CA., 2004. Preferential spread of the pathogenic fungus Rhizoctonia solani through structured soil SOIL BIOL BIOCHEM, v. 36
    Doi: http://doi.org/10.1016/j.soilbio.2003.09.006
  • Otten, W., Filipe, JAN. and Gilligan, CA., 2004. An empirical method to estimate the effect of soil on the rate for transmission of damping-off disease NEW PHYTOL, v. 162
    Doi: http://doi.org/10.1111/j.1469-8137.2004.01011.x
  • Otten, W., Bailey, DJ. and Gilligan, CA., 2004. Empirical evidence of spatial thresholds to control invasion of fungal parasites and saprotrophs NEW PHYTOL, v. 163
    Doi: http://doi.org/10.1111/j.1469-8137.2004.01086.x
  • Filipe, JAN., Maule, MM. and Gilligan, CA., 2004. On 'Analytical models for the patchy spread of plant disease'. Bull Math Biol, v. 66
    Doi: http://doi.org/10.1016/j.bulm.2003.11.001
  • Gibson, GJ., Kleczkowski, A. and Gilligan, CA., 2004. Bayesian analysis of botanical epidemics using stochastic compartmental models P NATL ACAD SCI USA, v. 101
    Doi: http://doi.org/10.1079/pnas.0400829101
  • Dybiec, B., Kleczkowski, A. and Gilligan, CA., 2004. Controlling disease spread on networks with incomplete knowledge PHYS REV E, v. 70
    Doi: http://doi.org/10.1103/PhysRevE.70.066145
  • Bailey, DJ., Kleczkowski, A. and Gilligan, CA., 2004. Erratum: Epidemiological dynamics and the efficiency of biological control of soil-borne disease during consecutive epidemics in a controlled environment (New Phytologist (2004) 161 (569-575)) New Phytologist, v. 162
    Doi: http://doi.org/10.1111/j.1469-8137.2004.01052.x
  • Keeling, MJ., Brooks, SP. and Gilligan, CA., 2004. Using conservation of pattern to estimate spatial parameters from a single snapshot P NATL ACAD SCI USA, v. 101
    Doi: http://doi.org/10.1073/pnas.0400335101
  • Bailey, DJ., Kleczkowski, A. and Gilligan, CA., 2004. Epidemiological dynamics and the efficiency of biological control of soil-borne disease during consecutive epidemics in a controlled environment NEW PHYTOL, v. 161
    Doi: http://doi.org/10.1046/j.1469-8137.2004.00973.x
  • 2003

  • Harris, K., Young, IM., Gilligan, CA., Otten, W. and Ritz, K., 2003. Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil FEMS MICROBIOL ECOL, v. 44
  • van den Bosch, F. and Gilligan, CA., 2003. Measures of durability of resistance PHYTOPATHOLOGY, v. 93
  • Filipe, JAN. and Gilligan, CA., 2003. Solution of epidemic models with quenched transients. Phys Rev E Stat Nonlin Soft Matter Phys, v. 67
    Doi: http://doi.org/10.1103/PhysRevE.67.021906
  • Otten, W., Filipe, JAN., Bailey, DJ. and Gilligan, CA., 2003. Quantification and analysis of transmission rates for soilborne epidemics ECOLOGY, v. 84
  • Truscott, JE. and Gilligan, CA., 2003. Response of a deterministic epidemiological system to a stochastically varying environment. Proc Natl Acad Sci U S A, v. 100
    Doi: http://doi.org/10.1073/pnas.1436273100
  • 2002

  • Gilligan, CA., 2002. An epidemiological framework for disease management ADV BOT RES, v. 38
  • Harris, K., Crabb, D., Young, IM., Weaver, H., Gilligan, CA., Otten, W. and Ritz, K., 2002. In situ visualisation of fungi in soil thin sections: problems with crystallisation of the fluorochrome FB 28 (Calcofluor M2R) and improved staining by SCRI Renaissance 2200 MYCOL RES, v. 106
    Doi: http://doi.org/10.1017/S0953756202005749
  • Park, AW., Gubbins, S. and Gilligan, CA., 2002. Extinction times for closed epidemics: the effects of host spatial structure ECOL LETT, v. 5
  • 2001

  • Truscott, JE. and Gilligan, CA., 2001. The effect of cultivation on the size, shape, and persistence of disease patches in fields. Proc Natl Acad Sci U S A, v. 98
    Doi: http://doi.org/10.1073/pnas.111548698
  • Stacey, AJ., Truscott, JE. and Gilligan, CA., 2001. Soil-borne fungal pathogens: scaling-up from hyphal to colony behaviour and the probability of disease transmission NEW PHYTOL, v. 150
  • Bailey, DJ., Thornton, CR., Dewey, FM. and Gilligan, CA., 2001. A non-destructive immunoblotting technique for visualisation and analysis of the growth dynamics of Rhizoctonia solani MYCOL RES, v. 105
  • Otten, W., Hall, D., Harris, K., Ritz, K., Young, IM. and Gilligan, CA., 2001. Soil physics, fungal epidemiology and the spread of Rhizoctonia solani NEW PHYTOL, v. 151
  • 2000

  • Bailey, DJ., Otten, W. and Gilligan, CA., 2000. Saprotrophic invasion by the soil-borne fungal plant pathogen Rhizoctonia solani and percolation thresholds NEW PHYTOL, v. 146
  • Gubbins, S., Gilligan, CA. and Kleczkowski, A., 2000. Population dynamics of plant-parasite interactions: thresholds for invasion. Theor Popul Biol, v. 57
    Doi: http://doi.org/10.1006/tpbi.1999.1441
  • Keeling, MJ. and Gilligan, CA., 2000. Metapopulation dynamics of bubonic plague. Nature, v. 407
    Doi: http://doi.org/10.1038/35038073
  • Keeling, MJ. and Gilligan, CA., 2000. Bubonic plague: a metapopulation model of a zoonosis. Proc Biol Sci, v. 267
    Doi: http://doi.org/10.1098/rspb.2000.1272
  • Webb, CR., Gilligan, CA. and Asher, MJC., 2000. Modelling the effect of temperature on the development of Polymyxa betae PLANT PATHOL, v. 49
  • Truscott, JE., Gilligan, CA. and Webb, CR., 2000. Quantitative analysis and model simplification of an epidemic model with primary and secondary infection. Bull Math Biol, v. 62
    Doi: http://doi.org/10.1006/bulm.1999.0158
  • 1999

  • Bailey, DJ. and Gilligan, CA., 1999. Dynamics of primary and secondary infection in take-all epidemics PHYTOPATHOLOGY, v. 89
  • Gubbins, S. and Gilligan, CA., 1999. Invasion thresholds for fungicide resistance: deterministic and stochastic analyses. Proc Biol Sci, v. 266
    Doi: http://doi.org/10.1098/rspb.1999.0957
  • Davies, JM., Stacey, AJ. and Gilligan, CA., 1999. Candida albicans hyphal invasion: thigmotropism or chemotropism? FEMS Microbiol Lett, v. 171
    Doi: http://doi.org/10.1111/j.1574-6968.1999.tb13439.x
  • Otten, W., Gilligan, CA., Watts, CW., Dexter, AR. and Hall, D., 1999. Continuity of air-filled pores and invasion thresholds for a soilborne fungal plant pathogen, Rhizoctonia solani SOIL BIOL BIOCHEM, v. 31
  • Willis, KJ., Kleczkowski, A., Briggs, KM. and Gilligan, CA., 1999. The role of sub-milankovitch climatic forcing in the initiation of the northern hemisphere glaciation. Science, v. 285
    Doi: http://doi.org/10.1126/science.285.5427.568
  • Webb, CR., Gilligan, CA. and Asher, MJC., 1999. A model for the temporal buildup of Polymyxa betae PHYTOPATHOLOGY, v. 89
  • Thornton, CR. and Gilligan, CA., 1999. Quantification of the effect of the hyperparasite Trichoderma harzianum on the saprotrophic growth dynamics of Rhizoctonia solani in compost using a monoclonal antibody-based ELISA MYCOL RES, v. 103
  • Thornton, CR., O'Neill, TM., Hilton, G. and Gilligan, CA., 1999. Detection and recovery of Rhizoctonia solani in naturally infested glasshouse soils using a combined baiting, double monoclonal antibody ELISA PLANT PATHOL, v. 48
  • Gibson, GJ., Gilligan, CA. and Kleczkowski, A., 1999. Predicting variability in biological control of a plant-pathogen system using stochastic models P ROY SOC LOND B BIO, v. 266
  • Swinton, J. and Gilligan, CA., 1999. Selecting hyperparasites for biocontrol of Dutch elm disease P ROY SOC LOND B BIO, v. 266
  • 1998

  • Swinton, J. and Gilligan, CA., 1998. Theory, data and experiments in heterogeneous transmission TRENDS MICROBIOL, v. 6
  • Swinton, J., Harwood, J., Grenfell, BT. and Gilligan, CA., 1998. Persistence thresholds for phocine distemper virus infection in harbour seal Phoca vitulina metapopulations J ANIM ECOL, v. 67
  • White, KAJ. and Gilligan, CA., 1998. Spatial heterogeneity in three-species, plant-parasite-hyperparasite, systems PHILOS T ROY SOC B, v. 353
  • Otten, W. and Gilligan, CA., 1998. Effect of physical conditions on the spatial and temporal dynamics of the soil-borne fungal pathogen Rhizoctonia solani NEW PHYTOL, v. 138
  • 1997

  • Dewey, FM., Thornton, CR. and Gilligan, CA., 1997. Use of monoclonal antibodies to detect, quantify and visualize fungi in soils ADV BOT RES, v. 24
  • Kleczkowski, A., Gilligan, CA. and Bailey, DJ., 1997. Scaling and spatial dynamics in plant-pathogen systems: From individuals to populations P ROY SOC LOND B BIO, v. 264
  • Gilligan, CA. and Bailey, DJ., 1997. Erratum: Components of pathozone behaviour (New Phytologist (1997) 135 (475-490)) New Phytologist, v. 136
    Doi: http://doi.org/10.1046/j.1469-8137.1997.00991.x
  • Gilligan, CA. and Bailey, DJ., 1997. Components of pathozone behaviour New Phytologist, v. 136
    Doi: http://doi.org/10.1046/j.1469-8137.1997.00768.x
  • Gubbins, S. and Gilligan, CA., 1997. Biological control in a disturbed environment PHILOS T ROY SOC B, v. 352
  • Truscott, JE., Webb, CR. and Gilligan, CA., 1997. Asymptotic analysis of an epidemic model with primary and secondary infection B MATH BIOL, v. 59
  • Gilligan, CA. and Bailey, DJ., 1997. Components of pathozone behaviour NEW PHYTOL, v. 135
  • Thornton, CR., Dewey, FM. and Gilligan, CA., 1997. Production and characterization of a monoclonal antibody raised against surface antigens from mycelium of Gaeumannomyces graminis var. tritici: Evidence for an extracellular polyphenol oxidase PHYTOPATHOLOGY, v. 87
  • Gubbins, S. and Gilligan, CA., 1997. Erratum: A test of heterogeneous mixing as a mechanism for ecological persistence in a disturbed environment (Proceedings of the Royal Society of London: Biological Sciences (1997) B 264 (227-232)) Proceedings of the Royal Society B: Biological Sciences, v. 264
  • Simons, SA. and Gilligan, CA., 1997. Relationships between stem canker, stolon canker, black scurf (Rhizoctonia solani) and yield of potato (Solanum tuberosum) under different agronomic conditions PLANT PATHOL, v. 46
  • Gubbins, S. and Gilligan, CA., 1997. Persistence of host-parasite interactions in a disturbed environment J THEOR BIOL, v. 188
  • Gilligan, CA., Gubbins, S. and Simons, SA., 1997. Analysis and fitting of an SIR model with host response to infection load for a plant disease PHILOS T ROY SOC B, v. 352
  • Bailey, DJ. and Gilligan, CA., 1997. Biological control of pathozone behaviour and disease dynamics of Rhizoctonia solani by Trichoderma viride NEW PHYTOL, v. 136
  • Simons, SA. and Gilligan, CA., 1997. Factors affecting the temporal progress of stem canker (Rhizoctonia solani) on potatoes (Solanum tuberosum) PLANT PATHOL, v. 46
  • Otten, W., Gilligan, CA. and Thornton, CR., 1997. Quantification of fungal antigens in soil with a monoclonal antibody-based ELISA: Analysis and reduction of soil-specific bias PHYTOPATHOLOGY, v. 87
  • Webb, CR., Werker, AR. and Gilligan, CA., 1997. Modelling the dynamical components of the sugar beet crop ANN BOT-LONDON, v. 80
  • Gilligan, CA. and Bailey, DJ., 1997. Components of pathozone behaviour (vol 135, pg 475, 1997) NEW PHYTOL, v. 136
  • Gilligan, CA. and Kleczkowski, A., 1997. Population dynamics of botanical epidemics involving primary and secondary infection PHILOS T ROY SOC B, v. 352
  • Gubbins, S. and Gilligan, CA., 1997. A test of heterogeneous mixing as a mechanism for ecological persistence in a disturbed environment P ROY SOC LOND B BIO, v. 264
  • 1996

  • Gubbins, S. and Gilligan, CA., 1996. Population dynamics of a parasite and hyperparasite in a closed system: Model analysis and parameter estimation P ROY SOC LOND B BIO, v. 263
  • Gilligan, CA., Simons, SA. and Hide, GA., 1996. Inoculum density and spatial pattern of Rhizoctonia solani in field plots of Solanum tuberosum: Effects of cropping frequency PLANT PATHOL, v. 45
  • Swinton, J. and Gilligan, CA., 1996. Dutch elm disease and the future of the elm in the UK: A quantitative analysis PHILOS T ROY SOC B, v. 351
  • Kleczkowski, A., Bailey, DJ. and Gilligan, CA., 1996. Dynamically generated variability in plant-pathogen systems with biological control P ROY SOC LOND B BIO, v. 263
  • Grose, MJ., Gilligan, CA., Spencer, D. and Goddard, BVD., 1996. Spatial heterogeneity of soil water around single roots: Use of CT-scanning to predict fungal growth in the rhizosphere NEW PHYTOL, v. 133
  • 1995

  • Grenfell, BT., Kleczkowski, A., Gilligan, CA. and Bolker, BM., 1995. Spatial heterogeneity, nonlinear dynamics and chaos in infectious diseases. Stat Methods Med Res, v. 4
    Doi: http://doi.org/10.1177/096228029500400205
  • 1994

  • GILLIGAN, CA., BRASSETT, PR. and CAMPBELL, A., 1994. MODELING OF EARLY INFECTION OF CEREAL ROOTS BY THE TAKE-ALL FUNGUS - A DETAILED MECHANISTIC SIMULATOR NEW PHYTOL, v. 128
  • GILLIGAN, CA., 1994. THE DYNAMICS OF INFECTION BY THE TAKE-ALL FUNGUS ON SEMINAL ROOTS OF WHEAT - SENSITIVITY ANALYSIS OF A STOCHASTIC SIMULATION-MODEL NEW PHYTOL, v. 128
  • THORNTON, CR., DEWEY, FM. and GILLIGAN, CA., 1994. DEVELOPMENT OF A MONOCLONAL ANTIBODY-BASED ENZYME-LINKED-IMMUNOSORBENT-ASSAY FOR THE DETECTION OF LIVE PROPAGULES OF TRICHODERMA-HARZIANUM IN A PEAT-BRAN MEDIUM SOIL BIOL BIOCHEM, v. 26
  • 1993

  • THORNTON, CR., DEWEY, FM. and GILLIGAN, CA., 1993. DEVELOPMENT OF MONOCLONAL ANTIBODY-BASED IMMUNOLOGICAL ASSAYS FOR THE DETECTION OF LIVE PROPAGULES OF RHIZOCTONIA-SOLANI IN SOIL PLANT PATHOL, v. 42
  • 1992

  • BLUNT, SJ., ASHER, MJC. and GILLIGAN, CA., 1992. THE EFFECT OF SOWING DATE ON INFECTION OF SUGAR-BEET BY POLYMYXA-BETAE PLANT PATHOL, v. 41
  • 1991

  • WERKER, AR., GILLIGAN, CA. and HORNBY, D., 1991. ANALYSIS OF DISEASE-PROGRESS CURVES FOR TAKE-ALL IN CONSECUTIVE CROPS OF WINTER-WHEAT PLANT PATHOL, v. 40
  • BLUNT, SJ., ASHER, MJC. and GILLIGAN, CA., 1991. INFECTION OF SUGAR-BEET BY POLYMYXA-BETAE IN RELATION TO SOIL-TEMPERATURE PLANT PATHOL, v. 40
  • 1990

  • BRASSETT, PR. and GILLIGAN, CA., 1990. EFFECTS OF SELF-SOWN WHEAT ON LEVELS OF THE TAKE-ALL DISEASE ON SEEDLINGS OF WINTER-WHEAT GROWN IN A MODEL SYSTEM J PHYTOPATHOL, v. 129
  • WERKER, AR. and GILLIGAN, CA., 1990. ANALYSIS OF THE EFFECTS OF SELECTED AGRONOMIC FACTORS ON THE DYNAMICS OF THE TAKE-ALL DISEASE OF WHEAT IN FIELD PLOTS PLANT PATHOL, v. 39
  • GILLIGAN, CA., 1990. COMPARISON OF DISEASE PROGRESS CURVES NEW PHYTOL, v. 115
  • GILLIGAN, CA., 1990. ANTAGONISTIC INTERACTIONS INVOLVING PLANT-PATHOGENS - FITTING AND ANALYSIS OF MODELS TO NONMONOTONIC CURVES FOR POPULATION AND DISEASE DYNAMICS NEW PHYTOL, v. 115
  • GILLIGAN, CA. and BRASSETT, PR., 1990. MODELING AND ESTIMATION OF THE RELATIVE POTENTIAL FOR INFECTION OF WINTER-WHEAT BY INOCULUM OF GAEUMANNOMYCES-GRAMINIS DERIVED FROM PROPAGULES AND INFECTED ROOTS J PHYTOPATHOL, v. 129
  • 1989

  • VANNIASINGHAM, VM. and GILLIGAN, CA., 1989. EFFECTS OF HOST, PATHOGEN AND ENVIRONMENTAL-FACTORS ON LATENT PERIOD AND PRODUCTION OF PYCNIDIA OF LEPTOSPHAERIA-MACULANS ON OILSEED RAPE LEAVES IN CONTROLLED ENVIRONMENTS MYCOL RES, v. 93
  • BRASSETT, PR. and GILLIGAN, CA., 1989. FITTING OF SIMPLE-MODELS FOR FIELD DISEASE PROGRESS DATA FOR THE TAKE-ALL FUNGUS PLANT PATHOL, v. 38
  • 1988

  • VANNIASINGHAM, VM. and GILLIGAN, CA., 1988. EFFECTS OF BIOTIC AND ABIOTIC FACTORS ON GERMINATION OF PYCNIDIOSPORES OF LEPTOSPHAERIA-MACULANS INVITRO T BRIT MYCOL SOC, v. 90
  • BRASSETT, PR. and GILLIGAN, CA., 1988. A MODEL FOR PRIMARY AND SECONDARY INFECTION IN BOTANICAL EPIDEMICS Z PFLANZENK PFLANZEN, v. 95
  • BRASSETT, PR. and GILLIGAN, CA., 1988. A DISCRETE PROBABILITY MODEL FOR POLYCYCLIC INFECTION BY SOIL-BORNE PLANT PARASITES NEW PHYTOL, v. 109
  • 1987

  • GILLIGAN, CA. and SIMONS, SA., 1987. INOCULUM EFFICIENCY AND PATHOZONE WIDTH FOR 2 HOST-PARASITE SYSTEMS NEW PHYTOL, v. 107
  • 1983

  • GILLIGAN, CA., 1983. MODELING OF SOILBORNE PATHOGENS ANNU REV PHYTOPATHOL, v. 21
  • GILLIGAN, CA., 1983. A TEST FOR RANDOMNESS OF INFECTION BY SOILBORNE PATHOGENS PHYTOPATHOLOGY, v. 73
  • 1982

  • GILLIGAN, CA., 1982. SIZE AND SHAPE OF SAMPLING UNITS FOR ESTIMATING INCIDENCE OF SHARP EYESPOT, RHIZOCTONIA-CEREALIS, IN PLOTS OF WHEAT J AGR SCI, v. 99
  • Gilligan, CA., 1982. Size and shape of sampling units for estimating incidence of sharp eyespot, Rhizoctonia cerealis, in plots of wheat The Journal of Agricultural Science, v. 99
    Doi: http://doi.org/10.1017/S0021859600030276
  • GILLIGAN, CA., 1982. STATISTICAL-ANALYSIS OF THE SPATIAL PATTERN OF BOTRYTIS-FABAE ON VICIA-FABA - A METHODOLOGICAL STUDY T BRIT MYCOL SOC, v. 79
  • 1981

  • MADDOCK, SE., INGRAM, DS. and GILLIGAN, CA., 1981. RESISTANCE OF CULTIVATED BRASSICAS TO PYRENOPEZIZA-BRASSICAE T BRIT MYCOL SOC, v. 76
  • 1980

  • GILLIGAN, CA., 1980. SIZE AND SHAPE OF SAMPLING UNITS FOR ESTIMATING INCIDENCE OF STEM CANKER ON OIL-SEED RAPE STUBBLE IN FIELD PLOTS AFTER SWATHING J AGR SCI, v. 94
  • Gilligan, CA., 1980. Dynamics of root colonization by the take-all fungus, Gaeumannomyces graminis Soil Biology and Biochemistry, v. 12
    Doi: http://doi.org/10.1016/0038-0717(80)90088-7
  • Gilligan, CA., 1980. Zone of potential infection between host roots and inoculum units of Gaeumannomyces graminis Soil Biology and Biochemistry, v. 12
    Doi: http://doi.org/10.1016/0038-0717(80)90089-9
  • Gilligan, CA., 1980. Colonization of lateral, seminal and adventitious roots of wheat by the take-all fungus, gaeumannomyces graminis var. tritici The Journal of Agricultural Science, v. 94
    Doi: http://doi.org/10.1017/S0021859600028926
  • GILLIGAN, CA., PECHAN, PM., DAY, R. and HILL, SA., 1980. BEET WESTERN YELLOWS VIRUS ON OILSEED RAPE (BRASSICA-NAPUS L) PLANT PATHOL, v. 29
  • 1979

  • GILLIGAN, CA., 1979. MODELING RHIZOSPHERE INFECTION PHYTOPATHOLOGY, v. 69
  • Internet publications

    2022

  • Nguyen, V-A., Bartels, DW. and Gilligan, CA., 2022. Modelling the spread and mitigation of an emerging vector-borne pathogen; citrus greening in the U.S.
    Doi: 10.1101/2022.05.04.490566
  • Godding, D., Stutt, ROJH., Alicai, T., Abidrabo, P., Okao-Okuja, G. and Gilligan, CA., 2022. Developing a predictive model for an emerging epidemic on cassava in sub-Saharan Africa
    Doi: 10.1101/2022.05.13.491768
  • 2018

  • Bussell, EH., Dangerfield, CE., Gilligan, CA. and Cunniffe, NJ., 2018. Applying optimal control theory to complex epidemiological models to inform real-world disease management
    Doi: http://doi.org/10.1101/405746
  • Other publications

    2022

  • Bradshaw, CD., Thurston, W., Hodson, D., Mona, T., Smith, JW., Millington, SC., Blasch, G., Alemayehu, Y., Gutu, K., Hort, MC. and Gilligan, CA., 2022. Irrigation can create new green bridges that promote rapid intercontinental spread of the wheat stem rust pathogen Environmental Research Letters, v. 17
    Doi: http://doi.org/10.1088/1748-9326/ac9ac7
  • Theses / dissertations

    2020 (No publication date)

  • Watkinson-Powell, B., 2020 (No publication date). Modelling spatial strategies for the durable deployment of crop disease resistance
  • Datasets

    2019 (No publication date)

  • Alicai, T., Omongo, C., Abidrabo, P., Okao-Okuja, G., Baguma, Y., Ogwok, E., Kawuki, R., Esuma, W., Tairo, F., Bua, A., Legg, J., Stutt, R., Godding, D., Sseruwagi, P., Ndunguru, J. and Gilligan, C., 2019 (No publication date). Cassava brown streak disease annual field survey data from 2004 to 2017 in Uganda
  • Conference proceedings

    2018

  • Parnell, SR., Gottwald, TR., Mastin, A., Cunniffe, NJ., Gilligan, CA. and Van den Bosch, F., 2018. Quantitative methods for the improved surveillance of emerging plant pathogens; an epidemiological approach PHYTOPATHOLOGY, v. 108
  • Cunniffe, NJ., Cobb, R., Meentemeyer, RK., Rizzo, DM. and Gilligan, CA., 2018. How where and when to control an established plant disease epidemic. Landscape-scale modeling of sudden oak death in California PHYTOPATHOLOGY, v. 108
  • Hodson, D., Jin, Y., Firpo, PDO., Szabo, LJ., Hovmoller, MS., Patpour, M., Nazari, K., Gilligan, CA., Meyer, M., Hort, MC., Millington, S., Pretorius, ZA., Park, RF., Fetch, TGJ. and Hansen, JG., 2018. Global wheat stem rust monitoring: Meeting the challenges of a re-emerging threat to wheat production PHYTOPATHOLOGY, v. 108
  • Sparks, AH., Garrett, KA., Gilligan, CA., Nelson, A. and Pembleton, K., 2018. Upscaling models, downscaling data or the right model for the right scale of application? PHYTOPATHOLOGY, v. 108
  • 2017

  • Patrick, M., Donnelly, R. and Gilligan, CA., 2017. A Toolkit for Testing Stochastic Simulations against Statistical Oracles Proceedings - 10th IEEE International Conference on Software Testing, Verification and Validation, ICST 2017,
    Doi: http://doi.org/10.1109/ICST.2017.50
  • 2016

  • Patrick, M., Elderfield, J., Stutt, ROJH., Rice, A. and Gilligan, CA., 2016. Software testing in a scientific research group Proceedings of the ACM Symposium on Applied Computing, v. 04-08-April-2016
    Doi: http://doi.org/10.1145/2851613.2851783
  • Patrick, M., Craig, AP., Cunniffe, NJ., Parry, M. and Gilligan, CA., 2016. Testing stochastic software using Pseudo-oracles ISSTA 2016 - Proceedings of the 25th International Symposium on Software Testing and Analysis,
    Doi: http://doi.org/10.1145/2931037.2931063
  • Patrick, M., Castle, MD., Stutt, ROJH. and Gilligan, CA., 2016. Automatic test image generation using procedural noise ASE 2016 - Proceedings of the 31st IEEE/ACM International Conference on Automated Software Engineering,
    Doi: http://doi.org/10.1145/2970276.2970333
  • 2014

  • Patrick, M., Stutt, ROJH. and Gilligan, CA., 2014. Rasterising epidemiological host data efficiently Proceedings - UKSim-AMSS 16th International Conference on Computer Modelling and Simulation, UKSim 2014,
    Doi: http://doi.org/10.1109/UKSim.2014.42
  • 2010

  • Meentemeyer, RK., Cunniffe, N., Cook, A., Rizzo, DM. and Gilligan, CA., 2010. Predicting the Spread of Sudden Oak Death in California (2010-2030): Epidemic Outcomes Under No Control PROCEEDINGS OF THE SUDDEN OAK DEATH FOURTH SCIENCE SYMPOSIUM, v. 229
  • Cobb, RC., Filipe, JAN., Meentemeyer, RK., Gilligan, CA., Lynch, SC. and Rizzo, DM., 2010. Community and Individual Effects on SOD Intensification in California Redwood Forests: Implications for Tanoak Persistence PROCEEDINGS OF THE SUDDEN OAK DEATH FOURTH SCIENCE SYMPOSIUM, v. 229
  • Filipe, JAN., Cobb, RC., Rizzo, DM., Meentemeyer, RK. and Gilligan, CA., 2010. Strategies for Control of Sudden Oak Death in Humboldt County-Informed Guidance Based on a Parameterized Epidemiological Model PROCEEDINGS OF THE SUDDEN OAK DEATH FOURTH SCIENCE SYMPOSIUM, v. 229
  • 2009

  • Perez-Reche, F., Taraskin, SN., Neri, FM., Gilligan, CA., Costa, LD., Viana, MP., Otten, W. and Grinev, D., 2009. BIOLOGICAL INVASION IN SOIL: COMPLEX NETWORK ANALYSIS 2009 16TH INTERNATIONAL CONFERENCE ON DIGITAL SIGNAL PROCESSING, VOLS 1 AND 2,
  • 2006

  • Kleczkowski, A., Dybiec, B. and Gilligan, CA., 2006. Economic and social factors in designing disease control strategies for epidemics on networks ACTA PHYSICA POLONICA B, v. 37
  • Otten, W. and Gilligan, CA., 2006. Soil structure and soil-borne diseases: using epidemiological concepts to scale from fungal spread to plant epidemics EUROPEAN JOURNAL OF SOIL SCIENCE, v. 57
    Doi: http://doi.org/10.1111/j.1365-2389.2005.00766.x
  • 2005

  • Gilligan, CA., Claessen, D. and van den Bosch, F., 2005. Spatial and temporal dynamics of gene movements arising from deployment of transgenic crops Environmental Costs and Benefits of Transgenic Crops, v. 7
  • Dybiec, B., Kleczkowski, A. and Gilligan, CA., 2005. Optimising control of disease spread of on networks ACTA PHYSICA POLONICA B, v. 36
  • 2003

  • Gilligan, CA., 2003. Economics of transgenic crops and pest resistance: An epidemiological perspective BATTLING RESISTANCE TO ANTIBIOTICS AND PESTICIDES,
  • 2001

  • Park, AW., Gubbins, S. and Gilligan, CA., 2001. Invasion and persistence of plant parasites in a spatially structured host population OIKOS, v. 94
  • 1995

  • GILLIGAN, CA., 1995. MODELING SOIL-BORNE PATHOGENS - REACTION-DIFFUSION MODELS CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE, v. 17
  • Book chapters

    2010

  • Otten, W., Grinev, D., Perez-Reche, F., Neri, F., da Costa, L., Biana, M., Gilligan, CA. and Taraskin, SN., 2010. Resilience of soil to biological invasion: analysis of spread on networks
  • 2009

  • Kleczkowski, A., Bailey, DJ., Otten, W., Grose, M. and Gilligan, CA., 2009. Implications of root spatial relationships in young wheat obtained from CT-scanning for an invasion by fungal pathogens
  • Perez-Reche, F., Taraskin, SN., Neri, FM., Gilligan, CA., Costa, LF., Viana, MP., Otten, W. and Grinev, D., 2009. Biological invasion in soil: complex network analysis
  • 2005

  • Gilligan, CA., Claessen, D. and van den Bosch, F., 2005. Spatial and temporal dynamics of gene movements arising from deployment of transgenic crops
  • 2004

  • Otten, W., Bailey, DJ., Ludlam, JJ. and Gilligan, CA., 2004. Can incomplete spatial coverage of control measures prevent invasion of fungal parasites?
  • Otten, W., Bates, A. and Gilligan, CA., 2004. Analysis of efficacy of a biocontrol agent to reduce transmission of infection in damping-off epidemics
  • 2003

  • Otten, W., Harris, K., Young, IM., Ritz, K. and Gilligan, CA., 2003. Soil structure, fungal exploration and consequences for biocontrol
  • Otten, W., Harris, K., Hall, D., Young, IM., Ritz, K. and Gilligan, CA., 2003. The heterogeneous soil environment: are there preferential pathways for fungal spread?
  • 2002

  • Gilligan, CA., 2002. Economics of transgenic crops and pst resistance: an epidemiological perspective
  • 1999

  • Gilligan, CA. and Swinton, J., 1999. A Modelling approach to the epidemiology of Dutch elm disease
  • 1995

  • Bolker, BM., Altmann, M., Aubert, M., Ball, F., Barlow, ND., Bowers, RG., Dobson, AP., Elkington, JS., Garnett, GP., Gilligan, CA., Hassell, MP., Isham, V., Jacquez, JA., Kleczkowski, A., Levin, SA., May, RM., Metz, JAJ., Mollison, D., Morris, M., Real, LA., Sattenspiel, L., Swinton, J., White, P. and Williams, BG., 1995. Spatial Dynamics Group Report
    Doi: 10.1017/cbo9780511629396.016
  • 1994

  • Gilligan, CA., 1994. Temporal aspects of the development of root disease epidemics
  • Gilligan, CA., 1994. Development of monoclonal antibody-based immunological assays for the detection of live propagules of Rhizoctonia solani in the soil
  • 1991

  • Gilligan, CA., 1991. Modelling of crop pathogens
  • 1990

  • Gilligan, CA., 1990. Mathematical models of infection
  • Gilligan, CA., 1990. Mathematical modelling and analysis of soilborne pathogens
  • 1988

  • Gilligan, CA., 1988. Analysis of the spatial pattern of soilborne pathogens
  • 1987

  • Gilligan, CA., 1987. Epidemiology of soil-borne plant pathogens
  • 1986

  • Gilligan, CA., 1986. Mathematical and statistical approaches to the analysis and modelling of soil-borne disease with reference to Allium white rot
  • 1985

  • Gilligan, CA., 1985. Dynamics of root colonisation by the take-all fungus
  • Gilligan, CA., 1985. Introduction (Mathematical modelling of crop disease)